Package: rphylo
Type: Package
Title: Phylogenetic Analysis with Dependent Discrete Models
Version: 0.1.1
Authors@R: c(
  person(given="Vivian G.",family="Li", 
         role = c("aut", "cre"),
         email="liguo.vivian@gmail.com"),
  person( given="Andrew",family="Meade",
         role = "ctb",
         comment = "Original 'BayesTraits' implementation"),
  person( given="Mark",family="Pagel",
         role = "ctb",
         comment = "Original 'BayesTraits' implementation")
  )
Description: Implementation of dependent discrete models (with
        reversible jump MCMC) derived from 'BayesTraits' V5.0.3
        <https://github.com/AndrewPMeade/BayesTraits-Release/tree/Release>.
        Original software copyright Andrew Meade and contributors,
        distributed under GPL-3. Modifications for this package by
        Vivian G. Li <liguo.vivian@gmail.com>. The following articles
        should be referenced when using this package: Pagel, M., A.
        Meade and D. Barker (2004) "Bayesian estimation of ancestral
        character states on phylogenies"
        <doi:10.1080/10635150490522232>; Pagel, M. (1994) "Detecting
        correlated evolution on phylogenies: a general method for the
        comparative analysis of discrete characters"
        <doi:10.1098/rspb.1994.0006>; Pagel, M. and A. Meade (2006)
        "Bayesian analysis of correlated evolution of discrete
        characters by reversible-jump Markov chain Monte Carlo"
        <doi:10.1086/503444>.
License: GPL-3
Encoding: UTF-8
Imports: ape, phangorn, expm, stats
LazyData: true
Config/roxygen2/version: 8.0.0
Depends: R (>= 3.5)
NeedsCompilation: no
Packaged: 2026-10-22 07:39:49 UTC; root
Author: Vivian G. Li [aut, cre], Andrew Meade [ctb] (Original
        'BayesTraits' implementation), Mark Pagel [ctb] (Original
        'BayesTraits' implementation)
Maintainer: Vivian G. Li <liguo.vivian@gmail.com>
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://007v.r-universe.dev
Date/Publication: 2026-06-23 15:28:37 UTC
RemoteUrl: https://github.com/cran/rphylo
RemoteRef: HEAD
RemoteSha: 4fe9a951b652e24d1199c6724fc0b77d6fcd0629